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Cellranger

Version: 3.0.0

Cell Ranger is a set of analysis pipelines that processes Chromium single cell 3 prime RNA-seq output to align reads, generate gene-cell matrices and ...

Last updated: December 4, 2018

Raxml-ng

Version: 0.7.0

RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. Its search heuristic is based on iteratively p ...

Last updated: October 30, 2018

PCGR

Version: 20181029

The Personal Cancer Genome Reporter (PCGR) is a stand-alone software package for functional annotation and translation of individual cancer genomes fo ...

Last updated: October 30, 2018

SNPhylo

Version: 20180901

A pipeline to generate a phylogenetic tree from huge SNP data. ...

Last updated: October 4, 2018

Picard

Version: 2.18.4

A set of Java-based tools for working with next generation sequencing data in the BAM. Part of the SAMtools project. ...

Last updated: September 12, 2018

Samtools

Version: 1.9

SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAM tools provide efficient utilities on manipula ...

Last updated: September 12, 2018

Rapsody

Version: 0.2

This tool provides a prediction of pathogenicity for Single Amino acid Variants (SAVs) by employing a Random Forest classifier trained on both sequenc ...

Last updated: September 8, 2018

Bracer

Version: 0.1

BraCeR - reconstruction of B cell receptor sequences from single-cell RNA-seq data. This tool reconstructs the sequences of rearranged and expressed B ...

Last updated: August 30, 2018

Tracer

Version: 0.5

TraCeR - reconstruction of T cell receptor sequences from single-cell RNA-seq data. This tool reconstructs the sequences of rearranged and expressed T ...

Last updated: August 30, 2018

Ascatngs

Version: 2.5.1

AscatNGS contains the Cancer Genome Projects workflow implementation of the ASCAT copy number algorithm for paired end sequencing. ...

Last updated: August 22, 2018